STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103480116Reticulon. (866 aa)    
Predicted Functional Partners:
sec63
SEC63 homolog, protein translocation regulator.
    
 
 0.504
vta1
Vesicle (multivesicular body) trafficking 1.
    
   0.502
LOC103458439
Receptor expression-enhancing protein.
    
 
 0.500
ENSPREP00000014222
Uncharacterized protein.
  
     0.474
LOC103476633
Uncharacterized protein.
  
     0.456
ENSPREP00000001255
Uncharacterized protein.
    
 0.437
LOC103481546
GTP cyclohydrolase 2.
    
   0.436
gch1
GTP cyclohydrolase 1.
    
   0.436
LOC103471655
Atlastin 3.
    
 
 0.402
snx15
Sorting nexin 15.
    
   0.400
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.