STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103463245Keratin 97; Belongs to the intermediate filament family. (431 aa)    
Predicted Functional Partners:
LOC103466878
Keratin 5; Belongs to the intermediate filament family.
   
 0.707
Unc79
Uncharacterized protein.
   
 0.676
ino80e
INO80 complex subunit E.
   
 0.503
LOC103464941
Keratin 4; Belongs to the intermediate filament family.
   
 0.497
LOC103466879
Keratin 8; Belongs to the intermediate filament family.
   
 0.497
cpsf1
Cleavage and polyadenylation specific factor 1.
    
  0.496
LOC103461037
RAN binding protein 2.
    
  0.491
cpsf4
Cleavage and polyadenylation specific factor 4.
    
 0.442
WDR33
WD repeat domain 33.
    
  0.439
cpsf2
Cleavage and polyadenylation specificity factor subunit 2.
    
  0.434
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.