STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103476605Uncharacterized protein. (265 aa)    
Predicted Functional Partners:
LOC103458439
Receptor expression-enhancing protein.
    
 
 0.729
mtx2
Metaxin 2.
      
 0.607
sec63
SEC63 homolog, protein translocation regulator.
    
 
 0.582
pdzd8
PDZ domain containing 8.
      
 0.572
copa
Coatomer subunit alpha; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network.
    
   0.493
terf2
HTH myb-type domain-containing protein.
    
 
 0.483
LOC103479391
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 
 0.473
LOC103474461
Cullin 3; Belongs to the cullin family.
    
 
 0.473
Sec61b
Uncharacterized protein.
      
 0.460
evx2
Even-skipped homeobox 2.
      
 0.458
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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