Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
rab3gap2RAB3 GTPase activating protein subunit 2 (non-catalytic). (1373 aa)    
Predicted Functional Partners:
rab3gap1
RAB3 GTPase activating protein subunit 1.
   
 0.999
tbc1d20
TBC1 domain family, member 20.
      
 0.894
tmco4
Transmembrane and coiled-coil domains 4.
      
 0.842
c2cd2
C2 calcium dependent domain containing 2.
      
 0.770
ENSPREP00000004065
Uncharacterized protein.
     
 0.758
LOC103478960
RAB18B, member RAS oncogene family.
     
 0.758
rab18
RAB18A, member RAS oncogene family.
     
 0.758
nbas
Neuroblastoma amplified sequence.
      
 0.758
vapa
VAMP (vesicle-associated membrane protein)-associated protein A, like.
   
 
 0.751
LOC103464667
VAMP (vesicle-associated membrane protein)-associated protein B and C.
   
 
 0.751
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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