STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103477211Calpain 1, (mu/I) large subunit a; Belongs to the peptidase C2 family. (720 aa)    
Predicted Functional Partners:
LOC103468663
Uncharacterized protein.
   
 
 0.903
LOC103462295
Zgc:153993.
   
 
 0.901
BAX
BCL2 associated X, apoptosis regulator.
     
 0.900
cast
Uncharacterized protein.
   
 0.673
LOC103467158
Uncharacterized protein.
   
  
 0.600
LOC103467157
Matrix metallopeptidase 9.
   
  
 0.600
ENSPREP00000021359
Matrix metallopeptidase 9.
   
  
 0.600
MMP9
Matrix metallopeptidase 9.
   
  
 0.600
LOC103460031
Uncharacterized protein.
   
0.551
capns1
Calpain, small subunit 1 b.
   
0.551
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.