STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rnf141Ring finger protein 141. (226 aa)    
Predicted Functional Partners:
cenpm
Proliferation associated nuclear element.
   
  
 0.728
trip12
Thyroid hormone receptor interactor 12.
     
 0.625
spata4
Spermatogenesis associated 4.
      
 0.576
LOC103465922
DUF4200 domain-containing protein.
      
 0.576
rnf14
RBR-type E3 ubiquitin transferase.
   
 
 0.574
noc2l
NOC2-like nucleolar associated transcriptional repressor.
      
 0.523
atg7
ATG7 autophagy related 7 homolog (S. cerevisiae).
     
 0.521
LOC103464600
Uncharacterized protein.
    
 
 0.516
ENSPREP00000031481
Leucine rich repeat containing 18a.
     
 0.512
lrrc18
Leucine rich repeat containing 18b.
     
 0.512
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.