LOC103477860 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC103477860

SATB homeobox 1b. (872 aa)

Predicted Functional Partners:

ube2i

0.673

LOC103468487

0.673

casp6

0.666

sumo1

0.599

pias4

0.585

LOC103462108

0.568

LOC103466533

0.568

LOC103460179

0.568

kctd2

0.493

cog2

0.484

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103460179	LOC103468487	ENSPREP00000016190	ENSPREP00000027513	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.858
LOC103460179	LOC103477860	ENSPREP00000016190	ENSPREP00000005764	Uncharacterized protein.	SATB homeobox 1b.	0.568
LOC103460179	kctd2	ENSPREP00000016190	ENSPREP00000019964	Uncharacterized protein.	Potassium channel tetramerization domain containing 2.	0.755
LOC103460179	pias4	ENSPREP00000016190	ENSPREP00000012849	Uncharacterized protein.	Protein inhibitor of activated STAT, 4a.	0.434
LOC103460179	sumo1	ENSPREP00000016190	ENSPREP00000022120	Uncharacterized protein.	Small ubiquitin like modifier 1.	0.942
LOC103460179	ube2i	ENSPREP00000016190	ENSPREP00000026310	Uncharacterized protein.	Ubiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family.	0.858
LOC103462108	LOC103468487	ENSPREP00000011832	ENSPREP00000027513	Protein inhibitor of activated STAT, 1a.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.858
LOC103462108	LOC103477860	ENSPREP00000011832	ENSPREP00000005764	Protein inhibitor of activated STAT, 1a.	SATB homeobox 1b.	0.568
LOC103462108	kctd2	ENSPREP00000011832	ENSPREP00000019964	Protein inhibitor of activated STAT, 1a.	Potassium channel tetramerization domain containing 2.	0.755
LOC103462108	pias4	ENSPREP00000011832	ENSPREP00000012849	Protein inhibitor of activated STAT, 1a.	Protein inhibitor of activated STAT, 4a.	0.439
LOC103462108	sumo1	ENSPREP00000011832	ENSPREP00000022120	Protein inhibitor of activated STAT, 1a.	Small ubiquitin like modifier 1.	0.942
LOC103462108	ube2i	ENSPREP00000011832	ENSPREP00000026310	Protein inhibitor of activated STAT, 1a.	Ubiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family.	0.858
LOC103466533	LOC103468487	ENSPREP00000015982	ENSPREP00000027513	Protein inhibitor of activated STAT, 1b.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.858
LOC103466533	LOC103477860	ENSPREP00000015982	ENSPREP00000005764	Protein inhibitor of activated STAT, 1b.	SATB homeobox 1b.	0.568
LOC103466533	kctd2	ENSPREP00000015982	ENSPREP00000019964	Protein inhibitor of activated STAT, 1b.	Potassium channel tetramerization domain containing 2.	0.755
LOC103466533	pias4	ENSPREP00000015982	ENSPREP00000012849	Protein inhibitor of activated STAT, 1b.	Protein inhibitor of activated STAT, 4a.	0.439
LOC103466533	sumo1	ENSPREP00000015982	ENSPREP00000022120	Protein inhibitor of activated STAT, 1b.	Small ubiquitin like modifier 1.	0.974
LOC103466533	ube2i	ENSPREP00000015982	ENSPREP00000026310	Protein inhibitor of activated STAT, 1b.	Ubiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family.	0.858
LOC103468487	LOC103460179	ENSPREP00000027513	ENSPREP00000016190	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Uncharacterized protein.	0.858
LOC103468487	LOC103462108	ENSPREP00000027513	ENSPREP00000011832	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Protein inhibitor of activated STAT, 1a.	0.858