STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000005771Si:dkeyp-44a8.4. (294 aa)    
Predicted Functional Partners:
COLEC12
Collectin subfamily member 12.
  
 
  0.546
LOC103464342
Complement C1q C chain.
  
  0.543
LOC108166264
Uncharacterized protein.
  
  
 0.536
ENSPREP00000019028
VWFA domain-containing protein.
  
     0.517
ENSPREP00000013925
Uncharacterized protein.
  
     0.515
ENSPREP00000022184
Uncharacterized protein.
  
 0.515
col6a1
Collagen, type VI, alpha 1.
  
0.493
LOC103482359
VWFA domain-containing protein.
  
   
0.485
COL21A1
Collagen type XXI alpha 1 chain.
  
   
0.484
colec11
Collectin sub-family member 11.
  
 
  0.474
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.