STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ssbp2Si:ch211-130m23.3. (359 aa)    
Predicted Functional Partners:
LOC103465371
LIM-domain binding 1b.
   
 
 0.685
LOC103471855
LIM domain binding 2a.
   
 
 0.685
ldb1
LIM domain binding 1a.
   
 
 0.685
lmo4
LIM domain only 4b.
    
 
 0.632
LHX3
LIM homeobox 3.
    
 
 0.630
lhx4
LIM homeobox 4.
    
 
 0.630
lmo3
LIM domain only 3.
    
 
 0.576
LOC103462448
LIM domain only 1.
    
 
 0.576
idi1
Isopentenyl-diphosphate delta isomerase 1.
    
 
 0.527
lmo2
LIM domain only 2 (rhombotin-like 1).
    
 
 0.519
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.