STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
arl16ADP-ribosylation factor-like 16. (165 aa)    
Predicted Functional Partners:
pde6d
60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.
    
 
 0.962
srprb
SRP receptor subunit beta.
      
 0.699
LOC103468061
Eph receptor B2a.
    
 0.681
elmod3
ELMO/CED-12 domain containing 3.
      
 0.670
p2ry1
Purinergic receptor P2Y1; Belongs to the G-protein coupled receptor 1 family.
    
 0.607
arl9
ADP-ribosylation factor-like 9.
    
 0.598
ift27
Intraflagellar transport 27.
      
 0.597
rnpc3
RNA-binding region (RNP1, RRM) containing 3.
      
 0.583
ift140
Intraflagellar transport 140 homolog (Chlamydomonas).
      
 0.581
ttc26
Tetratricopeptide repeat domain 26.
   
  
 0.544
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.