Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
abca3ATP-binding cassette, sub-family A (ABC1), member 3b. (1393 aa)    
Predicted Functional Partners:
lamp3
Uncharacterized protein.
   
 
 0.613
LPCAT1
Lysophosphatidylcholine acyltransferase 1.
   
 
 0.612
ENSPREP00000025671
Lysophosphatidylcholine acyltransferase 1.
   
 
 0.612
hopx
HOP homeobox.
   
  
 0.609
LOC103467002
Nuclear receptor subfamily 1, group H, member 5.
    
 0.568
nr1h4
Nuclear receptor subfamily 1, group H, member 4.
    
 0.568
abcf1
ATP-binding cassette, sub-family F (GCN20), member 1.
    
 
 0.526
LOC103477850
Uncharacterized protein.
    
 0.501
LOC103477849
Uncharacterized protein.
    
 0.501
myadml2
Myeloid-associated differentiation marker-like 2.
   
  
 0.492
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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