STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103471043Cathepsin F; Belongs to the peptidase C1 family. (471 aa)    
Predicted Functional Partners:
LOC103461861
BC1 (ubiquinol-cytochrome c reductase) synthesis-like; Belongs to the AAA ATPase family.
      
 0.925
bcl2
BCL2 apoptosis regulator b.
     
  0.900
LOC103481969
Baculoviral IAP repeat containing 5a.
     
 0.691
LOC103467341
Baculoviral IAP repeat containing 5b.
     
 0.673
Cln6
CLN6 transmembrane ER protein a.
   
  
 0.667
birc2
Baculoviral IAP repeat containing 2.
     
 0.660
cln5
CLN5 intracellular trafficking protein.
      
 0.658
cln3
Battenin.
      
 0.657
xiap
X-linked inhibitor of apoptosis.
     
 0.652
LOC103466909
BH4_2 domain-containing protein.
     
  0.650
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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