znf143 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

znf143

Zinc finger protein 143b. (655 aa)

Predicted Functional Partners:

gtf2a2

0.748

gtf2b

0.693

taf11

0.684

sp1

0.676

LOC103459886

0.675

polr3c

0.626

polr3b

0.603

brf2

0.594

bdp1

0.594

taf6

0.594

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103459886	gtf2a2	ENSPREP00000004559	ENSPREP00000013132	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.954
LOC103459886	gtf2b	ENSPREP00000004559	ENSPREP00000011330	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	General transcription factor IIB.	0.978
LOC103459886	polr3b	ENSPREP00000004559	ENSPREP00000026062	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.724
LOC103459886	sp1	ENSPREP00000004559	ENSPREP00000011446	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Sp1 transcription factor.	0.554
LOC103459886	taf11	ENSPREP00000004559	ENSPREP00000007898	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
LOC103459886	taf6	ENSPREP00000004559	ENSPREP00000033549	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
LOC103459886	znf143	ENSPREP00000004559	ENSPREP00000005922	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Zinc finger protein 143b.	0.675
bdp1	brf2	ENSPREP00000030045	ENSPREP00000016495	SANT domain-containing protein.	BRF2 RNA polymerase III transcription initiation factor subunit.	0.972
bdp1	gtf2b	ENSPREP00000030045	ENSPREP00000011330	SANT domain-containing protein.	General transcription factor IIB.	0.544
bdp1	polr3b	ENSPREP00000030045	ENSPREP00000026062	SANT domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.965
bdp1	polr3c	ENSPREP00000030045	ENSPREP00000025271	SANT domain-containing protein.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.972
bdp1	znf143	ENSPREP00000030045	ENSPREP00000005922	SANT domain-containing protein.	Zinc finger protein 143b.	0.594
brf2	bdp1	ENSPREP00000016495	ENSPREP00000030045	BRF2 RNA polymerase III transcription initiation factor subunit.	SANT domain-containing protein.	0.972
brf2	gtf2b	ENSPREP00000016495	ENSPREP00000011330	BRF2 RNA polymerase III transcription initiation factor subunit.	General transcription factor IIB.	0.404
brf2	polr3b	ENSPREP00000016495	ENSPREP00000026062	BRF2 RNA polymerase III transcription initiation factor subunit.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.933
brf2	polr3c	ENSPREP00000016495	ENSPREP00000025271	BRF2 RNA polymerase III transcription initiation factor subunit.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.892
brf2	znf143	ENSPREP00000016495	ENSPREP00000005922	BRF2 RNA polymerase III transcription initiation factor subunit.	Zinc finger protein 143b.	0.594
gtf2a2	LOC103459886	ENSPREP00000013132	ENSPREP00000004559	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.954
gtf2a2	gtf2b	ENSPREP00000013132	ENSPREP00000011330	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	General transcription factor IIB.	0.982
gtf2a2	polr3b	ENSPREP00000013132	ENSPREP00000026062	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.900