taf6l protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

taf6l

TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor. (639 aa)

Predicted Functional Partners:

tada2b

0.994

Taf12

0.994

supt3h

0.993

tada3

0.993

taf10

0.993

supt20h

0.992

supt7l

0.991

sgf29

0.990

TADA1

0.989

LOC103459886

0.986

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103459886	TADA1	ENSPREP00000004559	ENSPREP00000005904	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Transcriptional adaptor 1.	0.989
LOC103459886	Taf12	ENSPREP00000004559	ENSPREP00000007202	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
LOC103459886	sgf29	ENSPREP00000004559	ENSPREP00000017550	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	SAGA complex associated factor 29.	0.991
LOC103459886	supt20h	ENSPREP00000004559	ENSPREP00000017302	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	SPT20 homolog, SAGA complex component.	0.989
LOC103459886	supt3h	ENSPREP00000004559	ENSPREP00000006498	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	SPT3 homolog, SAGA and STAGA complex component.	0.986
LOC103459886	supt7l	ENSPREP00000004559	ENSPREP00000007101	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	SPT7 like, STAGA complex gamma subunit.	0.982
LOC103459886	tada2b	ENSPREP00000004559	ENSPREP00000007128	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Transcriptional adapter.	0.998
LOC103459886	tada3	ENSPREP00000004559	ENSPREP00000024856	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Transcriptional adaptor 3 (NGG1 homolog, yeast)-like.	0.999
LOC103459886	taf10	ENSPREP00000004559	ENSPREP00000025580	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
LOC103459886	taf6l	ENSPREP00000004559	ENSPREP00000005933	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	0.986
TADA1	LOC103459886	ENSPREP00000005904	ENSPREP00000004559	Transcriptional adaptor 1.	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.989
TADA1	Taf12	ENSPREP00000005904	ENSPREP00000007202	Transcriptional adaptor 1.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.994
TADA1	sgf29	ENSPREP00000005904	ENSPREP00000017550	Transcriptional adaptor 1.	SAGA complex associated factor 29.	0.993
TADA1	supt20h	ENSPREP00000005904	ENSPREP00000017302	Transcriptional adaptor 1.	SPT20 homolog, SAGA complex component.	0.996
TADA1	supt3h	ENSPREP00000005904	ENSPREP00000006498	Transcriptional adaptor 1.	SPT3 homolog, SAGA and STAGA complex component.	0.989
TADA1	supt7l	ENSPREP00000005904	ENSPREP00000007101	Transcriptional adaptor 1.	SPT7 like, STAGA complex gamma subunit.	0.989
TADA1	tada2b	ENSPREP00000005904	ENSPREP00000007128	Transcriptional adaptor 1.	Transcriptional adapter.	0.993
TADA1	tada3	ENSPREP00000005904	ENSPREP00000024856	Transcriptional adaptor 1.	Transcriptional adaptor 3 (NGG1 homolog, yeast)-like.	0.997
TADA1	taf10	ENSPREP00000005904	ENSPREP00000025580	Transcriptional adaptor 1.	TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.996
TADA1	taf6l	ENSPREP00000005904	ENSPREP00000005933	Transcriptional adaptor 1.	TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	0.989