STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tspan33Tetraspanin. (283 aa)    
Predicted Functional Partners:
pdzd11
PDZ domain containing 11.
    
 0.676
ccdc186
Si:ch211-225b10.4.
      
 0.663
pold2
Polymerase (DNA directed), delta 2, regulatory subunit.
      
 0.599
LOC103479353
Zgc:85843.
      
 0.598
TM6SF1
Transmembrane 6 superfamily member 1.
      
 0.598
fbln5
Fibulin 5.
     
 0.575
exo1
Exonuclease 1.
      
 0.573
MSL3
MSL complex subunit 3.
      
 0.527
tmem182
Transmembrane protein 182a.
      
 0.522
LOC103473596
Transmembrane protein 182b.
      
 0.522
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.