LOC103462200 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC103462200

G_PROTEIN_RECEP_F1_2 domain-containing protein. (424 aa)

Predicted Functional Partners:

gnrh1

0.979

gnrh2

0.926

GNAS

0.910

LOC103464384

0.910

LOC103458452

0.771

LOC103463549

0.771

LOC103470235

0.771

LOC103470237

0.771

LOC103462833

0.696

LOC103472833

0.692

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GNAS	LOC103458452	ENSPREP00000001796	ENSPREP00000015705	GNAS complex locus.	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	0.586
GNAS	LOC103462200	ENSPREP00000001796	ENSPREP00000005969	GNAS complex locus.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.910
GNAS	LOC103462833	ENSPREP00000001796	ENSPREP00000000520	GNAS complex locus.	Guanine nucleotide binding protein (G protein), gamma 13a.	0.764
GNAS	LOC103463549	ENSPREP00000001796	ENSPREP00000017763	GNAS complex locus.	Guanine nucleotide binding protein (G protein), alpha 11a (Gq class).	0.586
GNAS	LOC103464384	ENSPREP00000001796	ENSPREP00000013143	GNAS complex locus.	GNAS complex locus.	0.900
GNAS	LOC103470235	ENSPREP00000001796	ENSPREP00000029602	GNAS complex locus.	Uncharacterized protein.	0.585
GNAS	LOC103470237	ENSPREP00000001796	ENSPREP00000029648	GNAS complex locus.	Guanine nucleotide binding protein (G protein), alpha 14a.	0.587
GNAS	LOC103472833	ENSPREP00000001796	ENSPREP00000001967	GNAS complex locus.	Guanine nucleotide binding protein (G protein), beta polypeptide 3b.	0.516
LOC103458452	GNAS	ENSPREP00000015705	ENSPREP00000001796	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	GNAS complex locus.	0.586
LOC103458452	LOC103462200	ENSPREP00000015705	ENSPREP00000005969	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.771
LOC103458452	LOC103462833	ENSPREP00000015705	ENSPREP00000000520	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	Guanine nucleotide binding protein (G protein), gamma 13a.	0.712
LOC103458452	LOC103463549	ENSPREP00000015705	ENSPREP00000017763	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	Guanine nucleotide binding protein (G protein), alpha 11a (Gq class).	0.543
LOC103458452	LOC103464384	ENSPREP00000015705	ENSPREP00000013143	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	GNAS complex locus.	0.589
LOC103458452	LOC103470235	ENSPREP00000015705	ENSPREP00000029602	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	Uncharacterized protein.	0.544
LOC103458452	LOC103470237	ENSPREP00000015705	ENSPREP00000029648	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	Guanine nucleotide binding protein (G protein), alpha 14a.	0.546
LOC103458452	LOC103472833	ENSPREP00000015705	ENSPREP00000001967	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	Guanine nucleotide binding protein (G protein), beta polypeptide 3b.	0.516
LOC103458452	gnrh1	ENSPREP00000015705	ENSPREP00000000804	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	Uncharacterized protein.	0.400
LOC103462200	GNAS	ENSPREP00000005969	ENSPREP00000001796	G_PROTEIN_RECEP_F1_2 domain-containing protein.	GNAS complex locus.	0.910
LOC103462200	LOC103458452	ENSPREP00000005969	ENSPREP00000015705	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	0.771
LOC103462200	LOC103462833	ENSPREP00000005969	ENSPREP00000000520	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Guanine nucleotide binding protein (G protein), gamma 13a.	0.696