LOC103478486 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC103478486

Uncharacterized protein. (208 aa)

Predicted Functional Partners:

LOC103475650

0.581

vtn

0.581

pllp

0.528

pgap1

0.522

selenbp1

0.490

VMA21

0.465

HGFAC

0.440

gtpbp8

0.407

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HGFAC	LOC103478486	ENSPREP00000020844	ENSPREP00000005984	HGF activator.	Uncharacterized protein.	0.440
LOC103475650	LOC103478486	ENSPREP00000012682	ENSPREP00000005984	Vitronectin b.	Uncharacterized protein.	0.581
LOC103475650	vtn	ENSPREP00000012682	ENSPREP00000032231	Vitronectin b.	Vitronectin a.	0.907
LOC103478486	HGFAC	ENSPREP00000005984	ENSPREP00000020844	Uncharacterized protein.	HGF activator.	0.440
LOC103478486	LOC103475650	ENSPREP00000005984	ENSPREP00000012682	Uncharacterized protein.	Vitronectin b.	0.581
LOC103478486	VMA21	ENSPREP00000005984	ENSPREP00000007425	Uncharacterized protein.	Vacuolar ATPase assembly integral membrane protein VMA21; Required for the assembly of the V0 complex of the vacuolar ATPase (V-ATPase) in the endoplasmic reticulum; Belongs to the VMA21 family.	0.465
LOC103478486	gtpbp8	ENSPREP00000005984	ENSPREP00000028208	Uncharacterized protein.	GTP binding protein 8 (putative).	0.407
LOC103478486	pgap1	ENSPREP00000005984	ENSPREP00000001956	Uncharacterized protein.	Post-GPI attachment to proteins 1.	0.522
LOC103478486	pllp	ENSPREP00000005984	ENSPREP00000001115	Uncharacterized protein.	Plasmolipin.	0.528
LOC103478486	selenbp1	ENSPREP00000005984	ENSPREP00000022175	Uncharacterized protein.	Selenium binding protein 1.	0.490
LOC103478486	vtn	ENSPREP00000005984	ENSPREP00000032231	Uncharacterized protein.	Vitronectin a.	0.581
VMA21	LOC103478486	ENSPREP00000007425	ENSPREP00000005984	Vacuolar ATPase assembly integral membrane protein VMA21; Required for the assembly of the V0 complex of the vacuolar ATPase (V-ATPase) in the endoplasmic reticulum; Belongs to the VMA21 family.	Uncharacterized protein.	0.465
VMA21	selenbp1	ENSPREP00000007425	ENSPREP00000022175	Vacuolar ATPase assembly integral membrane protein VMA21; Required for the assembly of the V0 complex of the vacuolar ATPase (V-ATPase) in the endoplasmic reticulum; Belongs to the VMA21 family.	Selenium binding protein 1.	0.729
gtpbp8	LOC103478486	ENSPREP00000028208	ENSPREP00000005984	GTP binding protein 8 (putative).	Uncharacterized protein.	0.407
pgap1	LOC103478486	ENSPREP00000001956	ENSPREP00000005984	Post-GPI attachment to proteins 1.	Uncharacterized protein.	0.522
pllp	LOC103478486	ENSPREP00000001115	ENSPREP00000005984	Plasmolipin.	Uncharacterized protein.	0.528
selenbp1	LOC103478486	ENSPREP00000022175	ENSPREP00000005984	Selenium binding protein 1.	Uncharacterized protein.	0.490
selenbp1	VMA21	ENSPREP00000022175	ENSPREP00000007425	Selenium binding protein 1.	Vacuolar ATPase assembly integral membrane protein VMA21; Required for the assembly of the V0 complex of the vacuolar ATPase (V-ATPase) in the endoplasmic reticulum; Belongs to the VMA21 family.	0.729
vtn	LOC103475650	ENSPREP00000032231	ENSPREP00000012682	Vitronectin a.	Vitronectin b.	0.907
vtn	LOC103478486	ENSPREP00000032231	ENSPREP00000005984	Vitronectin a.	Uncharacterized protein.	0.581