STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103482174Mbt domain containing 1. (698 aa)    
Predicted Functional Partners:
LOC103457059
THAP-type domain-containing protein.
    
 0.928
rnf2
Ring finger protein 2.
    
 0.846
RING1
Ring finger protein 1.
    
 0.846
pcgf1
Polycomb group ring finger 1.
    
 0.844
pcgf6
Polycomb group ring finger 6.
    
 0.844
ENSPREP00000007462
Uncharacterized protein.
    
 
 0.839
tfdp1
Transcription factor.
   
 0.835
LOC103458130
BHLH domain-containing protein.
   
 0.814
ENSPREP00000023487
Uncharacterized protein.
   
 0.814
rybp
RING1 and YY1 binding protein b.
    
 0.789
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.