STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103471240Spondin 2a, extracellular matrix protein. (334 aa)    
Predicted Functional Partners:
itfg2
Integrin alpha FG-GAP repeat containing 2.
      
 0.597
gnl2
Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.
      
 0.572
rab28
Uncharacterized protein.
      
 0.567
pofut2
Protein O-fucosyltransferase 2.
     
 0.537
slc38a10
Solute carrier family 38 member 10.
      
 0.537
LOC103473624
Family with sequence similarity 163 member B, genome duplicate a.
      
 0.531
lmf1
Lipase maturation factor; Involved in the maturation of specific proteins in the endoplasmic reticulum; Belongs to the lipase maturation factor family.
   
  
 0.515
nrde2
NRDE-2, necessary for RNA interference, domain containing.
      
 0.492
fli1
Fli-1 proto-oncogene, ETS transcription factor a.
      
 0.471
LOC103478925
Neuropilin (NRP) and tolloid (TLL)-like 1.
      
 0.460
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.