STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmem167aProtein kish; Involved in the early part of the secretory pathway. Belongs to the KISH family. (72 aa)    
Predicted Functional Partners:
usp32
Ubiquitin specific peptidase 32; Belongs to the peptidase C19 family.
      
 0.571
golga5
Golgin A5.
   
  
 0.553
npm3
Nucleophosmin/nucleoplasmin, 3.
      
 0.549
ier3ip1
Immediate early response 3 interacting protein 1.
   
   0.522
ENSPREP00000025511
Uncharacterized protein.
   
   0.522
snrpg
Small nuclear ribonucleoprotein G.
   
    0.501
LOC103458105
Sec1 family domain containing 1; Belongs to the STXBP/unc-18/SEC1 family.
   
  
 0.488
ENSPREP00000004967
Uncharacterized protein.
   
  
 0.488
LOC103467277
G protein-coupled receptor 153.
      
 0.475
sf3b5
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
   
  
 0.464
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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