STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
akip1Uncharacterized protein. (135 aa)    
Predicted Functional Partners:
lsm10
LSM10, U7 small nuclear RNA associated.
      
 0.687
LOC103469438
Uncharacterized protein.
      
 0.616
LOC103481928
Dehydrogenase/reductase (SDR family) member 7Cb.
      
 0.616
POC1A
POC1 centriolar protein A.
    
   0.613
miox
Myo-inositol oxygenase.
      
 0.602
hmg20b
High mobility group 20B.
    
 
 0.589
Gm2a
GM2 ganglioside activator.
      
 0.584
LOC103460107
RAB11a, member RAS oncogene family.
    
 
 0.582
LOC103460500
Tubulin polymerization-promoting protein family member 3.
      
 0.581
prdm2
PR domain containing 2, with ZNF domain b.
      
 0.580
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.