STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103464530ADP-ribosylation factor-like 8Ba; Belongs to the small GTPase superfamily. Arf family. (186 aa)    
Predicted Functional Partners:
plekhm2
Pleckstrin homology domain containing, family M (with RUN domain) member 2.
   
 
 0.904
LOC103465512
Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.
  
  
 
0.900
plekhm1
Pleckstrin homology domain containing, family M (with RUN domain) member 1.
    
 
 0.854
rab2a
RAB2A, member RAS oncogene family.
   
 
 0.666
RAB7A
RAB7A, member RAS oncogene family.
   
 0.645
LOC103465062
RAB7a, member RAS oncogene family.
   
 0.645
rubcn
Rubicon autophagy regulator.
    
 0.627
lamtor1
Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.
   
 0.624
tmem192
Transmembrane protein 192.
    
 0.607
vps41
Vacuolar protein sorting-associated protein 41 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport pathways; Belongs to the VPS41 family.
    
 
 0.570
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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