STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000006034Uncharacterized protein. (853 aa)    
Predicted Functional Partners:
ENSPREP00000006052
Calponin-homology (CH) domain-containing protein.
 
      0.900
flnc
Filamin C, gamma b (actin binding protein 280).
  
  
 
0.900
ENSPREP00000005335
Calponin-homology (CH) domain-containing protein.
 
      0.899
ENSPREP00000007769
Filamin binding LIM protein 1.
   
 0.843
LOC103457067
Ankyrin repeat and SOCS box containing 2a, tandem duplicate 1.
    
 0.735
vcl
Vinculin b.
   
 
 0.577
LOC103476978
Vinculin a.
   
 
 0.577
trip6
Uncharacterized protein.
   
 0.573
LOC103463937
LIM domain containing preferred translocation partner in lipoma.
   
 0.573
MYOZ1
Myozenin 1.
    
 
 0.569
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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