Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000006058Versican a. (352 aa)    
Predicted Functional Partners:
LOC103472829
Uncharacterized protein.
 
 
 
 0.917
ENSPREP00000026548
C-type lectin domain-containing protein.
 
  
  0.904
LOC103473495
Uncharacterized protein.
 
      0.758
vcan
Versican a.
 
     0.636
LOC103469607
Tenascin C.
   
 0.557
LOC103473322
Zmp:0000000846.
   
 0.557
ADAMTS5
ADAM metallopeptidase with thrombospondin type 1 motif 5.
    
 0.445
ncam2
Zgc:152904.
   
 0.406
ncam1
Neural cell adhesion molecule 1b.
   
 0.406
hps5
Hermansky-Pudlak syndrome 5 protein homolog; May regulate the synthesis and function of lysosomes and of highly specialized organelles, such as melanosomes and platelet dense granules.
      
 0.406
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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