STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103465723Uncharacterized protein. (581 aa)    
Predicted Functional Partners:
trim44
Tripartite motif containing 44.
    
 
 0.595
Trim62
Tripartite motif containing 62, tandem duplicate 1.
      
 0.592
trim8
Tripartite motif containing 8b.
      
 0.532
LOC103476933
RING-type domain-containing protein.
      
 0.532
LOC103472202
Chromobox homolog 3a (HP1 gamma homolog, Drosophila).
    
 0.484
CBX1
Uncharacterized protein.
    
 0.484
CBX1-2
Chromobox homolog 1b (HP1 beta homolog Drosophila).
    
 0.484
cbx5
Chromobox homolog 5 (HP1 alpha homolog, Drosophila).
    
 0.484
bbox1
Butyrobetaine (gamma), 2-oxoglutarate dioxygenase (gamma-butyrobetaine hydroxylase) 1.
      
 0.408
trim32
Tripartite motif containing 32.
      
 0.400
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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