STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000006071Fin bud initiation factor b. (280 aa)    
Predicted Functional Partners:
ENSPREP00000011352
Uncharacterized protein.
      
 0.549
ush1c
Usher syndrome 1C.
      
 0.549
cd81
Tetraspanin.
      
 0.471
LOC103466481
Tetraspanin.
      
 0.471
sergef
Secretion regulating guanine nucleotide exchange factor.
      
 0.470
znf536
Zinc finger protein 536.
      
 0.468
ZFC3H1
Zinc finger C3H1-type containing.
      
 0.468
ENSPREP00000031412
Uncharacterized protein.
      
 0.468
tbc1d15
TBC1 domain family, member 15.
      
 0.467
tmem204
Transmembrane protein 204.
  
   
 0.438
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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