STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000006071Fin bud initiation factor b. (280 aa)    
Predicted Functional Partners:
LOC103464866
Fibromodulin a.
   
    0.852
LOC103467543
Fibromodulin b.
   
    0.852
ENSPREP00000011352
Uncharacterized protein.
      
 0.819
sergef
Secretion regulating guanine nucleotide exchange factor.
      
 0.758
ush1c
Usher syndrome 1C.
      
 0.724
cd81
Tetraspanin.
      
 0.624
LOC103466481
Tetraspanin.
      
 0.624
LOC103465734
Copine VIII.
      
 0.598
CPNE8
Copine 8.
      
 0.598
znf536
Zinc finger protein 536.
      
 0.592
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.