STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000006087KASH domain-containing protein. (885 aa)    
Predicted Functional Partners:
ENSPREP00000023185
Uncharacterized protein.
 
  
  0.990
ENSPREP00000006125
Uncharacterized protein.
 
     0.939
ENSPREP00000023334
Uncharacterized protein.
 
     0.933
ENSPREP00000006155
Uncharacterized protein.
 
     0.931
ENSPREP00000006328
Uncharacterized protein.
 
     0.929
ENSPREP00000023301
Uncharacterized protein.
 
     0.896
sun2
SUN domain-containing protein.
    
 0.735
sun1
Sad1 and UNC84 domain containing 1.
    
 0.545
LOC103473032
Uncharacterized protein; Belongs to the intermediate filament family.
    
 0.463
lmna
Lamin A; Belongs to the intermediate filament family.
    
 0.408
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.