vcan protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

vcan

Versican a. (284 aa)

Predicted Functional Partners:

LOC103470440

0.901

LOC103473173

0.894

hapln3

0.880

ENSPREP00000018724

0.878

hapln2

0.871

hapln4

0.835

ENSPREP00000006058

0.636

ENSPREP00000026524

0.559

LOC103469607

0.557

LOC103473322

0.557

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000006058	LOC103469607	ENSPREP00000006058	ENSPREP00000021488	Versican a.	Tenascin C.	0.557
ENSPREP00000006058	LOC103473322	ENSPREP00000006058	ENSPREP00000028988	Versican a.	Zmp:0000000846.	0.557
ENSPREP00000006058	vcan	ENSPREP00000006058	ENSPREP00000006088	Versican a.	Versican a.	0.636
ENSPREP00000018724	LOC103469607	ENSPREP00000018724	ENSPREP00000021488	Uncharacterized protein.	Tenascin C.	0.667
ENSPREP00000018724	LOC103473322	ENSPREP00000018724	ENSPREP00000028988	Uncharacterized protein.	Zmp:0000000846.	0.667
ENSPREP00000018724	vcan	ENSPREP00000018724	ENSPREP00000006088	Uncharacterized protein.	Versican a.	0.878
ENSPREP00000026524	LOC103469607	ENSPREP00000026524	ENSPREP00000021488	Uncharacterized protein.	Tenascin C.	0.883
ENSPREP00000026524	LOC103470440	ENSPREP00000026524	ENSPREP00000006103	Uncharacterized protein.	Hyaluronan and proteoglycan link protein 1a.	0.734
ENSPREP00000026524	LOC103473173	ENSPREP00000026524	ENSPREP00000020312	Uncharacterized protein.	Hyaluronan and proteoglycan link protein 1b.	0.734
ENSPREP00000026524	LOC103473322	ENSPREP00000026524	ENSPREP00000028988	Uncharacterized protein.	Zmp:0000000846.	0.883
ENSPREP00000026524	vcan	ENSPREP00000026524	ENSPREP00000006088	Uncharacterized protein.	Versican a.	0.559
LOC103469607	ENSPREP00000006058	ENSPREP00000021488	ENSPREP00000006058	Tenascin C.	Versican a.	0.557
LOC103469607	ENSPREP00000018724	ENSPREP00000021488	ENSPREP00000018724	Tenascin C.	Uncharacterized protein.	0.667
LOC103469607	ENSPREP00000026524	ENSPREP00000021488	ENSPREP00000026524	Tenascin C.	Uncharacterized protein.	0.883
LOC103469607	LOC103470440	ENSPREP00000021488	ENSPREP00000006103	Tenascin C.	Hyaluronan and proteoglycan link protein 1a.	0.520
LOC103469607	LOC103473173	ENSPREP00000021488	ENSPREP00000020312	Tenascin C.	Hyaluronan and proteoglycan link protein 1b.	0.508
LOC103469607	LOC103473322	ENSPREP00000021488	ENSPREP00000028988	Tenascin C.	Zmp:0000000846.	0.409
LOC103469607	vcan	ENSPREP00000021488	ENSPREP00000006088	Tenascin C.	Versican a.	0.557
LOC103470440	ENSPREP00000026524	ENSPREP00000006103	ENSPREP00000026524	Hyaluronan and proteoglycan link protein 1a.	Uncharacterized protein.	0.734
LOC103470440	LOC103469607	ENSPREP00000006103	ENSPREP00000021488	Hyaluronan and proteoglycan link protein 1a.	Tenascin C.	0.520