vcan protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

vcan

Versican a. (284 aa)

Predicted Functional Partners:

LOC103470440

0.919

LOC103473173

0.914

ENSPREP00000018724

0.897

hapln3

0.880

hapln2

0.878

hapln4

0.842

ENSPREP00000026524

0.642

ENSPREP00000006058

0.636

ENSPREP00000020240

0.480

LOC103469607

0.440

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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structured XML interaction data, according to the 'PSI-MI' data standard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000006058	LOC103469607	ENSPREP00000006058	ENSPREP00000021488	Versican a.	Tenascin C.	0.440
ENSPREP00000006058	LOC103470440	ENSPREP00000006058	ENSPREP00000006103	Versican a.	Hyaluronan and proteoglycan link protein 1a.	0.422
ENSPREP00000006058	vcan	ENSPREP00000006058	ENSPREP00000006088	Versican a.	Versican a.	0.636
ENSPREP00000018724	ENSPREP00000026524	ENSPREP00000018724	ENSPREP00000026524	Uncharacterized protein.	Uncharacterized protein.	0.434
ENSPREP00000018724	LOC103469607	ENSPREP00000018724	ENSPREP00000021488	Uncharacterized protein.	Tenascin C.	0.530
ENSPREP00000018724	vcan	ENSPREP00000018724	ENSPREP00000006088	Uncharacterized protein.	Versican a.	0.897
ENSPREP00000020240	LOC103469607	ENSPREP00000020240	ENSPREP00000021488	Uncharacterized protein.	Tenascin C.	0.440
ENSPREP00000020240	LOC103470440	ENSPREP00000020240	ENSPREP00000006103	Uncharacterized protein.	Hyaluronan and proteoglycan link protein 1a.	0.435
ENSPREP00000020240	vcan	ENSPREP00000020240	ENSPREP00000006088	Uncharacterized protein.	Versican a.	0.480
ENSPREP00000026524	ENSPREP00000018724	ENSPREP00000026524	ENSPREP00000018724	Uncharacterized protein.	Uncharacterized protein.	0.434
ENSPREP00000026524	LOC103469607	ENSPREP00000026524	ENSPREP00000021488	Uncharacterized protein.	Tenascin C.	0.784
ENSPREP00000026524	LOC103470440	ENSPREP00000026524	ENSPREP00000006103	Uncharacterized protein.	Hyaluronan and proteoglycan link protein 1a.	0.768
ENSPREP00000026524	LOC103473173	ENSPREP00000026524	ENSPREP00000020312	Uncharacterized protein.	Hyaluronan and proteoglycan link protein 1b.	0.759
ENSPREP00000026524	vcan	ENSPREP00000026524	ENSPREP00000006088	Uncharacterized protein.	Versican a.	0.642
LOC103469607	ENSPREP00000006058	ENSPREP00000021488	ENSPREP00000006058	Tenascin C.	Versican a.	0.440
LOC103469607	ENSPREP00000018724	ENSPREP00000021488	ENSPREP00000018724	Tenascin C.	Uncharacterized protein.	0.530
LOC103469607	ENSPREP00000020240	ENSPREP00000021488	ENSPREP00000020240	Tenascin C.	Uncharacterized protein.	0.440
LOC103469607	ENSPREP00000026524	ENSPREP00000021488	ENSPREP00000026524	Tenascin C.	Uncharacterized protein.	0.784
LOC103469607	vcan	ENSPREP00000021488	ENSPREP00000006088	Tenascin C.	Versican a.	0.440
LOC103470440	ENSPREP00000006058	ENSPREP00000006103	ENSPREP00000006058	Hyaluronan and proteoglycan link protein 1a.	Versican a.	0.422