STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103478479Si:dkey-79d12.5. (227 aa)    
Predicted Functional Partners:
cnot8
CCR4-NOT transcription complex, subunit 8.
    
 0.637
LOC103470954
CCR4-NOT transcription complex, subunit 7.
    
 0.637
cnot11
CCR4-NOT transcription complex, subunit 11.
    
 0.605
cnot1
CCR4-NOT transcription complex, subunit 1.
    
 0.603
cnot10
CCR4-NOT transcription complex, subunit 10.
    
 0.580
cnot9
CCR4-NOT transcription complex subunit 9.
    
 0.541
CNOT2
CCR4-NOT transcription complex subunit 2.
    
 0.518
LOC103466190
CCR4-NOT transcription complex, subunit 2.
    
 0.518
cnot4
CCR4-NOT transcription complex, subunit 4a.
     
 0.486
LOC103472876
CCR4-NOT transcription complex, subunit 3b.
    
 0.425
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.