STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tbckTBC1 domain containing kinase. (887 aa)    
Predicted Functional Partners:
clg6h12orf4
Zgc:154077.
    
 
 0.978
LOC103478148
Interleukin 6 receptor.
    
 
 0.925
LOC103464509
Tumor suppressor 2, mitochondrial calcium regulator.
    
   0.906
ppp1r21
Protein phosphatase 1, regulatory subunit 21.
   
 
 0.818
RBPMS
RNA binding protein, mRNA processing factor.
    
   0.753
nme6
Nucleoside diphosphate kinase.
   
  
 0.713
LOC103465299
Canopy FGF signaling regulator 2.
      
 0.685
POLR2E
RNA polymerase II subunit E.
      
 0.647
pdap1
Pdgfa associated protein 1b.
      
 0.598
CDH8
Cadherin 8; Cadherins are calcium-dependent cell adhesion proteins.
      
 0.575
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.