STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cisd1Zgc:110843. (102 aa)    
Predicted Functional Partners:
ENSPREP00000005449
Uncharacterized protein.
   
  
 0.936
ENSPREP00000020277
RBR-type E3 ubiquitin transferase.
    
 
 0.804
ddb1
Damage-specific DNA binding protein 1.
    
 
 0.799
ENSPREP00000012301
tRNA-synt_1e domain-containing protein.
      
 0.758
cars2
Cysteinyl-tRNA synthetase 2, mitochondrial.
      
 0.714
tomm70
Translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae).
      
 0.709
CISD3
CDGSH iron sulfur domain 3.
   
  
 0.677
hsbp1
Heat shock factor binding protein 1a.
      
 0.603
st3gal4
ST3 beta-galactoside alpha-2,3-sialyltransferase 4; Belongs to the glycosyltransferase 29 family.
      
 0.589
cul4b
Cullin 4B; Belongs to the cullin family.
    
 
 0.589
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.