edil3 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

edil3

EGF-like repeats and discoidin I-like domains 3a. (533 aa)

Predicted Functional Partners:

pros1

0.770

lman1

0.672

mcfd2

0.630

LOC103463228

0.560

ENSPREP00000003320

0.550

slc40a1

0.550

atp7a

0.516

LOC103475683

0.516

atp7b

0.516

aasdh

0.516

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000003320	LOC103463228	ENSPREP00000003320	ENSPREP00000033161	Solute carrier family 40 protein; May be involved in iron transport and iron homeostasis. Belongs to the ferroportin (FP) (TC 2.A.100) family. SLC40A subfamily.	Ceruloplasmin; Belongs to the multicopper oxidase family.	0.729
ENSPREP00000003320	LOC103475683	ENSPREP00000003320	ENSPREP00000022303	Solute carrier family 40 protein; May be involved in iron transport and iron homeostasis. Belongs to the ferroportin (FP) (TC 2.A.100) family. SLC40A subfamily.	Hephaestin-like 1b; Belongs to the multicopper oxidase family.	0.729
ENSPREP00000003320	edil3	ENSPREP00000003320	ENSPREP00000006151	Solute carrier family 40 protein; May be involved in iron transport and iron homeostasis. Belongs to the ferroportin (FP) (TC 2.A.100) family. SLC40A subfamily.	EGF-like repeats and discoidin I-like domains 3a.	0.550
ENSPREP00000003320	slc40a1	ENSPREP00000003320	ENSPREP00000008949	Solute carrier family 40 protein; May be involved in iron transport and iron homeostasis. Belongs to the ferroportin (FP) (TC 2.A.100) family. SLC40A subfamily.	Solute carrier family 40 protein; May be involved in iron transport and iron homeostasis. Belongs to the ferroportin (FP) (TC 2.A.100) family. SLC40A subfamily.	0.903
LOC103463228	ENSPREP00000003320	ENSPREP00000033161	ENSPREP00000003320	Ceruloplasmin; Belongs to the multicopper oxidase family.	Solute carrier family 40 protein; May be involved in iron transport and iron homeostasis. Belongs to the ferroportin (FP) (TC 2.A.100) family. SLC40A subfamily.	0.729
LOC103463228	LOC103475683	ENSPREP00000033161	ENSPREP00000022303	Ceruloplasmin; Belongs to the multicopper oxidase family.	Hephaestin-like 1b; Belongs to the multicopper oxidase family.	0.904
LOC103463228	aasdh	ENSPREP00000033161	ENSPREP00000029752	Ceruloplasmin; Belongs to the multicopper oxidase family.	Aminoadipate-semialdehyde dehydrogenase.	0.516
LOC103463228	atp7a	ENSPREP00000033161	ENSPREP00000008396	Ceruloplasmin; Belongs to the multicopper oxidase family.	ATPase copper transporting alpha.	0.600
LOC103463228	atp7b	ENSPREP00000033161	ENSPREP00000023366	Ceruloplasmin; Belongs to the multicopper oxidase family.	ATPase copper transporting beta.	0.600
LOC103463228	edil3	ENSPREP00000033161	ENSPREP00000006151	Ceruloplasmin; Belongs to the multicopper oxidase family.	EGF-like repeats and discoidin I-like domains 3a.	0.560
LOC103463228	lman1	ENSPREP00000033161	ENSPREP00000026702	Ceruloplasmin; Belongs to the multicopper oxidase family.	Lectin, mannose-binding, 1.	0.471
LOC103463228	mcfd2	ENSPREP00000033161	ENSPREP00000015964	Ceruloplasmin; Belongs to the multicopper oxidase family.	Multiple coagulation factor deficiency 2.	0.419
LOC103463228	pros1	ENSPREP00000033161	ENSPREP00000031907	Ceruloplasmin; Belongs to the multicopper oxidase family.	Protein S.	0.639
LOC103463228	slc40a1	ENSPREP00000033161	ENSPREP00000008949	Ceruloplasmin; Belongs to the multicopper oxidase family.	Solute carrier family 40 protein; May be involved in iron transport and iron homeostasis. Belongs to the ferroportin (FP) (TC 2.A.100) family. SLC40A subfamily.	0.757
LOC103475683	ENSPREP00000003320	ENSPREP00000022303	ENSPREP00000003320	Hephaestin-like 1b; Belongs to the multicopper oxidase family.	Solute carrier family 40 protein; May be involved in iron transport and iron homeostasis. Belongs to the ferroportin (FP) (TC 2.A.100) family. SLC40A subfamily.	0.729
LOC103475683	LOC103463228	ENSPREP00000022303	ENSPREP00000033161	Hephaestin-like 1b; Belongs to the multicopper oxidase family.	Ceruloplasmin; Belongs to the multicopper oxidase family.	0.904
LOC103475683	aasdh	ENSPREP00000022303	ENSPREP00000029752	Hephaestin-like 1b; Belongs to the multicopper oxidase family.	Aminoadipate-semialdehyde dehydrogenase.	0.516
LOC103475683	atp7a	ENSPREP00000022303	ENSPREP00000008396	Hephaestin-like 1b; Belongs to the multicopper oxidase family.	ATPase copper transporting alpha.	0.574
LOC103475683	atp7b	ENSPREP00000022303	ENSPREP00000023366	Hephaestin-like 1b; Belongs to the multicopper oxidase family.	ATPase copper transporting beta.	0.574
LOC103475683	edil3	ENSPREP00000022303	ENSPREP00000006151	Hephaestin-like 1b; Belongs to the multicopper oxidase family.	EGF-like repeats and discoidin I-like domains 3a.	0.516