STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103470636Uncharacterized protein. (733 aa)    
Predicted Functional Partners:
susd1
Sushi domain containing 1.
     
 0.598
fam131c
Family with sequence similarity 131 member C.
      
 0.597
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
      
 0.549
qser1
Glutamine and serine rich 1.
      
 0.503
LOC103470198
Transmembrane p24 trafficking protein 7.
      
 0.483
upb1
Ureidopropionase, beta.
      
 0.481
gucd1
Guanylyl cyclase domain containing 1.
      
 0.479
epcam
Epithelial cell adhesion molecule.
      
 0.461
tsr1
TSR1 ribosome maturation factor.
      
 0.427
LOC103463153
Si:ch73-60h1.1; Belongs to the protein kinase superfamily.
      
 0.418
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.