has1 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

has1

Hyaluronan synthase 1. (572 aa)

Predicted Functional Partners:

dele1

0.752

cpvl

0.671

ugdh

0.657

hacl1

0.621

ilvbl

0.621

hyal1

0.572

LOC103475867

0.553

LOC103475798

0.553

kdm6b

0.553

kdm6a

0.553

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103475798	LOC103475867	ENSPREP00000014271	ENSPREP00000002425	Lysine (K)-specific demethylase 6A, like.	Lysine (K)-specific demethylase 6B, b.	0.640
LOC103475798	has1	ENSPREP00000014271	ENSPREP00000006185	Lysine (K)-specific demethylase 6A, like.	Hyaluronan synthase 1.	0.553
LOC103475798	kdm6a	ENSPREP00000014271	ENSPREP00000030520	Lysine (K)-specific demethylase 6A, like.	Lysine (K)-specific demethylase 6A.	0.626
LOC103475798	kdm6b	ENSPREP00000014271	ENSPREP00000021959	Lysine (K)-specific demethylase 6A, like.	Lysine (K)-specific demethylase 6B, a.	0.634
LOC103475867	LOC103475798	ENSPREP00000002425	ENSPREP00000014271	Lysine (K)-specific demethylase 6B, b.	Lysine (K)-specific demethylase 6A, like.	0.640
LOC103475867	has1	ENSPREP00000002425	ENSPREP00000006185	Lysine (K)-specific demethylase 6B, b.	Hyaluronan synthase 1.	0.553
LOC103475867	kdm6a	ENSPREP00000002425	ENSPREP00000030520	Lysine (K)-specific demethylase 6B, b.	Lysine (K)-specific demethylase 6A.	0.635
LOC103475867	kdm6b	ENSPREP00000002425	ENSPREP00000021959	Lysine (K)-specific demethylase 6B, b.	Lysine (K)-specific demethylase 6B, a.	0.630
cpvl	has1	ENSPREP00000002119	ENSPREP00000006185	Carboxypeptidase vitellogenic like; Belongs to the peptidase S10 family.	Hyaluronan synthase 1.	0.671
dele1	has1	ENSPREP00000002670	ENSPREP00000006185	Uncharacterized protein.	Hyaluronan synthase 1.	0.752
hacl1	has1	ENSPREP00000002472	ENSPREP00000006185	2-hydroxyacyl-CoA lyase 1; Belongs to the TPP enzyme family.	Hyaluronan synthase 1.	0.621
has1	LOC103475798	ENSPREP00000006185	ENSPREP00000014271	Hyaluronan synthase 1.	Lysine (K)-specific demethylase 6A, like.	0.553
has1	LOC103475867	ENSPREP00000006185	ENSPREP00000002425	Hyaluronan synthase 1.	Lysine (K)-specific demethylase 6B, b.	0.553
has1	cpvl	ENSPREP00000006185	ENSPREP00000002119	Hyaluronan synthase 1.	Carboxypeptidase vitellogenic like; Belongs to the peptidase S10 family.	0.671
has1	dele1	ENSPREP00000006185	ENSPREP00000002670	Hyaluronan synthase 1.	Uncharacterized protein.	0.752
has1	hacl1	ENSPREP00000006185	ENSPREP00000002472	Hyaluronan synthase 1.	2-hydroxyacyl-CoA lyase 1; Belongs to the TPP enzyme family.	0.621
has1	hyal1	ENSPREP00000006185	ENSPREP00000006757	Hyaluronan synthase 1.	Hyaluronidase.	0.572
has1	ilvbl	ENSPREP00000006185	ENSPREP00000007371	Hyaluronan synthase 1.	IlvB (bacterial acetolactate synthase)-like; Belongs to the TPP enzyme family.	0.621
has1	kdm6a	ENSPREP00000006185	ENSPREP00000030520	Hyaluronan synthase 1.	Lysine (K)-specific demethylase 6A.	0.553
has1	kdm6b	ENSPREP00000006185	ENSPREP00000021959	Hyaluronan synthase 1.	Lysine (K)-specific demethylase 6B, a.	0.553