Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pdlim4PDZ and LIM domain 4. (364 aa)    
Predicted Functional Partners:
rsph1
Uncharacterized protein.
   
  
 0.778
LOC103470528
PDZ and LIM domain 2 (mystique).
  
  
0.723
trip6
Uncharacterized protein.
   
 
 0.680
LOC103463937
LIM domain containing preferred translocation partner in lipoma.
   
 
 0.680
ptpn13
Protein tyrosine phosphatase non-receptor type 13.
    
 0.623
ENSPREP00000031260
Uncharacterized protein.
    
 0.623
ENSPREP00000031334
KIND domain-containing protein.
    
 0.623
ENSPREP00000018298
Uncharacterized protein.
   
0.591
pdlim7
PDZ and LIM domain 7.
   
 
0.573
LOC103473769
PDZ and LIM domain 5b.
   
 
0.571
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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