STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tap1Transporter 1, ATP-binding cassette, sub-family B (MDR/TAP). (744 aa)    
Predicted Functional Partners:
LOC103479782
Calreticulin.
   
 0.937
ENSPREP00000003577
TAP binding protein (tapasin), tandem duplicate 2.
   
 0.928
LOC103472572
Protein disulfide-isomerase.
   
  0.921
LOC103472928
Proteasome subunit beta.
 
 
 0.683
LOC103460923
Proteasome subunit beta.
 
 
 0.683
LOC103472929
Transporter associated with antigen processing, subunit type a.
  
 
0.604
LOC103460927
Transporter associated with antigen processing, subunit type a.
  
 
0.604
Katnal2
Katanin p60 subunit A-like 2.
  
 0.569
abcb7
ATP-binding cassette, sub-family B (MDR/TAP), member 7.
    
0.483
ENSPREP00000006454
Uncharacterized protein.
    
 0.483
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.