Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lrtm2Leucine-rich repeats and transmembrane domains 2a. (362 aa)    
Predicted Functional Partners:
pitx1
Homeobox protein.
      
 0.932
ripk2
Receptor-interacting serine-threonine kinase 2.
    
 0.928
snx16
Sorting nexin 16.
      
 0.604
pitx2
Homeobox protein.
      
 0.586
LOC103476530
Homeobox protein.
      
 0.586
LOC103464408
Immunoglobulin superfamily, member 8.
      
 0.576
dtnbp1
Dystrobrevin binding protein 1b.
      
 0.516
LOC103468306
Si:zfos-323e3.4.
  
 
  0.513
LOC103469889
Leucine rich repeat containing 8 VRAC subunit Ab.
  
 
  0.499
lrrc8a
Leucine rich repeat containing 8 VRAC subunit Aa.
  
 
  0.497
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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