STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103465962SPARC-like 1. (641 aa)    
Predicted Functional Partners:
lum
Lumican.
   
 
 0.785
LOC103459210
Decorin; May affect the rate of fibrils formation.
   
 
 0.760
LOC103474035
Secreted phosphoprotein 1.
      
 0.675
serpinh1
Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1b; Belongs to the serpin family.
   
 
 0.610
LOC103476145
Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1a; Belongs to the serpin family.
   
 
 0.610
fam20a
FAM20A golgi associated secretory pathway pseudokinase.
     
 0.603
LOC103465969
Uncharacterized protein.
      
 0.581
Stab1
Link domain-containing protein.
     
 0.552
ENSPREP00000028118
Uncharacterized protein.
     
 0.552
ENSPREP00000028193
Uncharacterized protein.
     
 0.552
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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