STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103471225C1q and TNF related 2. (304 aa)    
Predicted Functional Partners:
morn5
MORN repeat containing 5.
      
 0.934
cdadc1
Cytidine and dCMP deaminase domain containing 1.
   
  
 0.613
ENSPREP00000031340
annotation not available
  
     0.533
ENSPREP00000027401
Uncharacterized protein.
  
     0.515
ENSPREP00000013925
Uncharacterized protein.
  
     0.503
col6a1
Collagen, type VI, alpha 1.
  
0.503
nhlrc2
NHL repeat containing 2.
    
 0.411
ccdc25
Coiled-coil domain containing 25.
      
 0.400
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.