STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000006281Uncharacterized protein. (547 aa)    
Predicted Functional Partners:
lamb3
Uncharacterized protein.
   
0.960
LOC103473396
Laminin, gamma 3.
 
 
0.952
LOC103466132
CD44 molecule (Indian blood group) b.
    
 0.917
ENSPREP00000014939
Uncharacterized protein.
 
 
 
 0.914
ENSPREP00000014846
Uncharacterized protein.
 
 
 
0.906
lama5
Laminin, alpha 5.
     
 
0.900
Lama1
Uncharacterized protein.
 
      0.899
Lama2
Laminin_I domain-containing protein.
 
 
 
 0.842
LOC103481979
Integrin, alpha 3b; Belongs to the integrin alpha chain family.
   
 0.830
itga6
Integrin, alpha 6a; Belongs to the integrin alpha chain family.
   
 0.804
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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