STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
neurod1Neurogenic differentiation factor. (353 aa)    
Predicted Functional Partners:
ascl1
Achaete-scute family bHLH transcription factor 1a.
   
 
0.702
LOC103465959
Synaptic vesicle glycoprotein 2.
   
  
 0.601
LOC103458615
NK2 homeobox 2a.
   
 0.577
dcx
Uncharacterized protein.
      
 0.558
bdnf
Brain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family.
      
 0.546
tbr1
T-box brain transcription factor 1b.
   
  
 0.535
celsr1
Cadherin EGF LAG seven-pass G-type receptor 1a; Belongs to the G-protein coupled receptor 2 family.
      
 0.519
LOC103467258
Hairy-related 12.
   
 0.514
ENSPREP00000018401
NK6 homeobox 1.
   
  
 0.483
LOC103466558
Nuclear receptor subfamily 2, group E, member 3.
   
 
 0.480
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.