STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103464518TAR DNA binding protein. (402 aa)    
Predicted Functional Partners:
ENSPREP00000027744
TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
 0.936
ENSPREP00000020277
RBR-type E3 ubiquitin transferase.
    
 
 0.904
tardbp
TAR DNA binding protein, like.
  
  
 
0.901
ewsr1
EWS RNA-binding protein 1b.
   
 0.897
LOC103471205
Heat shock protein 4b.
   
 0.849
LOC103475404
Heat shock protein 4a.
   
 0.849
ubqln4
Ubiquilin 4.
   
 0.805
gsc
Goosecoid.
    
   0.792
LOC103474154
Serine and arginine rich splicing factor 1a.
   
 0.779
LOC103475485
Uncharacterized protein.
   
 0.779
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.