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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103472121BTB (POZ) domain containing 3a. (410 aa)    
Predicted Functional Partners:
LOC103479391
CULLIN_2 domain-containing protein; Belongs to the cullin family.
   
 0.609
LOC103474461
Cullin 3; Belongs to the cullin family.
   
 0.609
cops2
COP9 signalosome subunit 2.
   
  0.597
cops3
COP9 signalosome subunit 3.
    
  0.592
cul1
Cullin 1b; Belongs to the cullin family.
   
 0.578
rbx1
Ring-box 1, E3 ubiquitin protein ligase.
   
 0.572
cops5
COP9 signalosome subunit 5.
    
  0.565
ppp1r42
Protein phosphatase 1, regulatory subunit 42.
    
  0.550
ENSPREP00000020872
Uncharacterized protein.
    
  0.540
cops4
COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis).
    
  0.515
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.