STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000006347Uncharacterized protein. (431 aa)    
Predicted Functional Partners:
ENSPREP00000006302
Uncharacterized protein.
 
      0.900
col10a1
Collagen, type X, alpha 1b.
 
   
  0.491
ENSPREP00000033600
Uncharacterized protein.
 
 
 
  0.470
LOC103477666
Collagen, type VIII, alpha 1b.
 
 
 
 0.450
tep1
Uncharacterized protein.
    
 0.427
COL21A1
Collagen type XXI alpha 1 chain.
 
   
 
0.423
col6a1
Collagen, type VI, alpha 1.
 
 
 0.419
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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