STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103479575Tetratricopeptide repeat domain 39C. (666 aa)    
Predicted Functional Partners:
ttc5
Tetratricopeptide repeat domain 5.
      
 0.534
Ttc9c
Tetratricopeptide repeat domain 9C.
      
 0.533
ttc4
Tetratricopeptide repeat domain 4.
      
 0.529
rab30
RAB30, member RAS oncogene family.
      
 0.503
ttc14
Tetratricopeptide repeat domain 14.
      
 0.462
ttc25
Tetratricopeptide repeat domain 25.
      
 0.408
ttc26
Tetratricopeptide repeat domain 26.
      
 0.406
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.