STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gramd1bGRAM domain containing 1Bb. (926 aa)    
Predicted Functional Partners:
LOC103480397
5-hydroxytryptamine (serotonin) receptor 2C, G protein-coupled-like 1.
   
    0.958
gramd1c
GRAM domain containing 1c.
    
 
 0.923
ENSPREP00000028539
GRAM domain-containing protein.
    
 
 0.923
ENSPREP00000022608
GRAM domain-containing protein.
    
   0.893
LOC103464324
H6 family homeobox 4.
      
 0.694
tbrg1
Transforming growth factor beta regulator 1.
      
 0.675
garnl3
GTPase activating Rap/RanGAP domain like 3.
      
 0.611
nyx
Nyctalopin.
     
 0.589
ENSPREP00000005683
Uncharacterized protein.
    
 
 0.581
trappc10
Trafficking protein particle complex 10.
    
 
 0.581
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.