STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
smu1SMU1 DNA replication regulator and spliceosomal factor b. (511 aa)    
Predicted Functional Partners:
ik
IK cytokine.
   
 0.962
mfap1
Microfibril associated protein 1.
   
 0.958
zmat2
Zinc finger, matrin-type 2.
    
 0.898
prpf6
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).
   
 0.843
wbp4
Uncharacterized protein.
    
 0.833
txnl4a
Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.
    
 0.820
wbp11
WW domain binding protein 11.
    
 0.812
UBL5
Ubiquitin like 5.
    
 0.805
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
   
  0.800
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
    
 0.775
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.