nexmif protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

nexmif

Neurite extension and migration factor b. (1422 aa)

Predicted Functional Partners:

rlim

0.723

cop1

0.577

dio2

0.572

ephx4

0.572

gsc

0.517

zc4h2

0.429

ENSPREP00000027617

0.419

LOC103473291

0.419

zbtb2

0.410

sema6b

0.405

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000027617	nexmif	ENSPREP00000027617	ENSPREP00000006387	Coagulation factor II (thrombin) receptor-like 1, tandem duplicate 1.	Neurite extension and migration factor b.	0.419
LOC103473291	nexmif	ENSPREP00000027629	ENSPREP00000006387	Coagulation factor II (thrombin) receptor-like 1, tandem duplicate 2.	Neurite extension and migration factor b.	0.419
cop1	dio2	ENSPREP00000031152	ENSPREP00000017049	COP1 E3 ubiquitin ligase.	Iodothyronine deiodinase; Responsible for the deiodination of T4 (3,5,3',5'- tetraiodothyronine).	0.599
cop1	ephx4	ENSPREP00000031152	ENSPREP00000020933	COP1 E3 ubiquitin ligase.	Epoxide hydrolase 4.	0.611
cop1	gsc	ENSPREP00000031152	ENSPREP00000017905	COP1 E3 ubiquitin ligase.	Goosecoid.	0.599
cop1	nexmif	ENSPREP00000031152	ENSPREP00000006387	COP1 E3 ubiquitin ligase.	Neurite extension and migration factor b.	0.577
dio2	cop1	ENSPREP00000017049	ENSPREP00000031152	Iodothyronine deiodinase; Responsible for the deiodination of T4 (3,5,3',5'- tetraiodothyronine).	COP1 E3 ubiquitin ligase.	0.599
dio2	ephx4	ENSPREP00000017049	ENSPREP00000020933	Iodothyronine deiodinase; Responsible for the deiodination of T4 (3,5,3',5'- tetraiodothyronine).	Epoxide hydrolase 4.	0.592
dio2	gsc	ENSPREP00000017049	ENSPREP00000017905	Iodothyronine deiodinase; Responsible for the deiodination of T4 (3,5,3',5'- tetraiodothyronine).	Goosecoid.	0.414
dio2	nexmif	ENSPREP00000017049	ENSPREP00000006387	Iodothyronine deiodinase; Responsible for the deiodination of T4 (3,5,3',5'- tetraiodothyronine).	Neurite extension and migration factor b.	0.572
ephx4	cop1	ENSPREP00000020933	ENSPREP00000031152	Epoxide hydrolase 4.	COP1 E3 ubiquitin ligase.	0.611
ephx4	dio2	ENSPREP00000020933	ENSPREP00000017049	Epoxide hydrolase 4.	Iodothyronine deiodinase; Responsible for the deiodination of T4 (3,5,3',5'- tetraiodothyronine).	0.592
ephx4	gsc	ENSPREP00000020933	ENSPREP00000017905	Epoxide hydrolase 4.	Goosecoid.	0.600
ephx4	nexmif	ENSPREP00000020933	ENSPREP00000006387	Epoxide hydrolase 4.	Neurite extension and migration factor b.	0.572
gsc	cop1	ENSPREP00000017905	ENSPREP00000031152	Goosecoid.	COP1 E3 ubiquitin ligase.	0.599
gsc	dio2	ENSPREP00000017905	ENSPREP00000017049	Goosecoid.	Iodothyronine deiodinase; Responsible for the deiodination of T4 (3,5,3',5'- tetraiodothyronine).	0.414
gsc	ephx4	ENSPREP00000017905	ENSPREP00000020933	Goosecoid.	Epoxide hydrolase 4.	0.600
gsc	nexmif	ENSPREP00000017905	ENSPREP00000006387	Goosecoid.	Neurite extension and migration factor b.	0.517
nexmif	ENSPREP00000027617	ENSPREP00000006387	ENSPREP00000027617	Neurite extension and migration factor b.	Coagulation factor II (thrombin) receptor-like 1, tandem duplicate 1.	0.419
nexmif	LOC103473291	ENSPREP00000006387	ENSPREP00000027629	Neurite extension and migration factor b.	Coagulation factor II (thrombin) receptor-like 1, tandem duplicate 2.	0.419