Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
itgb1bp1Integrin beta 1 binding protein 1. (193 aa)    
Predicted Functional Partners:
krit1
KRIT1 ankyrin repeat containing.
    
 
 0.992
ccm2
CCM2 scaffold protein.
    
 
 0.990
ccm2l
CCM2 like scaffold protein.
    
 
 0.884
frmd8
FERM domain containing 8.
    
 
 0.762
pdcd10
Programmed cell death 10b.
      
 0.716
itgb1
Integrin beta; Belongs to the integrin beta chain family.
    
 
 0.678
LOC103482508
Integrin beta.
    
 
 0.678
LOC103479472
Integrin beta; Belongs to the integrin beta chain family.
    
 
 0.678
LOC103469022
Uncharacterized protein; Belongs to the integrin alpha chain family.
    
   0.658
LOC103481979
Integrin, alpha 3b; Belongs to the integrin alpha chain family.
    
   0.658
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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