STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cdc5lCDC5 cell division cycle 5-like (S. pombe). (809 aa)    
Predicted Functional Partners:
plrg1
Pleiotropic regulator 1.
   
 0.999
prpf19
Pre-mRNA processing factor 19.
   
 0.999
bcas2
BCAS2 pre-mRNA processing factor.
   
 0.999
ctnnbl1
Catenin, beta like 1.
   
 0.999
cwc15
CWC15 spliceosome associated protein homolog.
   
 0.999
crnkl1
Crooked neck pre-mRNA splicing factor 1.
   
 0.990
xab2
XPA binding protein 2.
   
 0.988
wbp11
WW domain binding protein 11.
   
 0.988
syf2
SYF2 pre-mRNA-splicing factor.
   
 0.987
sf3b1
Splicing factor 3b, subunit 1.
   
 
 0.978
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.